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Table 2 Major features of the 12 chromosome-borne IMEs and ICEs analyzed

From: VIM-encoding IncpSTY plasmids and chromosome-borne integrative and mobilizable elements (IMEs) and integrative and conjugative elements (ICEs) in Pseudomonas

Category

MGE

Accession number

Host bacterium

Country

blaVIM

Nucleotide position in the chromosome

Refs.

Tn6916-related IMEs

Tn6916

CP014062

P. monteilii

FDAARGOS_171

USA

None

Not applicable

[33]

Tn6917

CP043395

P. monteilii

918,607

China

blaVIM-2

2624899..2625699

This study

Tn6918-related IMEs

Tn6918

CP045553

P. putida

159,349

China

blaVIM-2

813783..814583

This study

Tn6919

CP016634

P. putida

IEC33019

Brazil

None

Not applicable

—

Tn6417-related ICEs

Tn6417

CP013993

P. aeruginosa

DHS01

France

None

Not applicable

[7]

Tn6413

CP030075

P. aeruginosa

6762

China

blaVIM-4

409196..409996

[7]

Tn6953

CP046405

P. aeruginosa

SE5443

China

blaVIM-2

4906548..4907348

This study

Tn6954

KY623658

Alcaligenes faecalis

GZAF3

Palestine

blaVIM-2

63643..64443

[36]

Tn6955

MF168944

P. aeruginosa

HSV3483

Portugal

blaVIM-2

62615..63415

[3]

Tn6956

MF168946

P. aeruginosa

FFUP_PS_CB5

Portugal

blaVIM-2

93931..94731

[3]

Tn6957

CP043328

P. aeruginosa

CCUG 51971

Sweden

blaVIM-4

5251865..5252665

–

Tn6958

CP048039

A. faecalis

MUB14

Poland

blaVIM-4

659107..659907

[37]

  1. A collection of 12 fully sequenced chromosome-borne MGEs, which included all the four Tn6916- or Tn6918-related IMEs and the eight Tn6417-related ICEs composed of Tn6417 itself plus all the six blaVIM-carrying ones, were included in a detailed sequence comparison