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Table 3 Rank order of microorganisms in sepsis-3 positive and sepsis-3 negative episodes

From: Correlation of clinical sepsis definitions with microbiological characteristics in patients admitted through a sepsis alert system; a prospective cohort study

Sepsis-3a positive episodes

Sepsis-3b negative episodes

Microorganism

n (%)

Microorganism

n (%)

Clinically relevant microorganisms

 Escherichia coli

43 (27.0)

Escherichia coli

10 (30.3)

 Staphylococcus aureus

19 (11.9)

Streptococcus pneumoniae

2 (6.1)

 Klebsiella pneumoniae

11 (6.9)

Streptococcus anginosus (milleri) group

2 (6.1)

 Staphylococcus epidermidis

9 (5.7)

Bacteroides fragilis

2 (6.1)

 Pseudomonas aeruginosa

8 (5.0)

Parvimonas micra

2 (6.1)

 Klebsiella oxytoca

7 (4.4)

Klebsiella pneumoniae

1 (3.0)

 Enterococcus faecalis

7 (4.4)

Pseudomonas aeruginosa

1 (3.0)

 Enterococcus faecium

6 (3.8)

Klebsiella oxytoca

1 (3.0)

 Streptococcus agalactiae

5 (3.1)

Enterobacter cloacae

1 (3.0)

 Group A streptococci

5 (3.1)

Moraxella (Branhamella) catarrhalis

1 (3.0)

 Streptococcus pneumoniae

4 (2.5)

Acinetobacter species

1 (3.0)

 Serratia marcescens

3 (1.9)

Campylobacter species

1 (3.0)

 Proteus mirabilis

2 (1.3)

Haemophilus influenzae

1 (3.0)

 Pantoea species

2 (1.3)

Staphylococcus aureus

1 (3.0)

 Citrobacter freundii

2 (1.3)

Staphylococcus epidermidis

1 (3.0)

 Streptococcus mitis group

2 (1.3)

Enterococcus faecalis

1 (3.0)

 Group B streptococci

2 (1.3)

Enterococcus faecium

1 (3.0)

 Othersb

22 (13.8)

Othersb

3 (9.1)

Total clinically relevant microorganisms

159

Total clinically relevant microorganisms

33

Contaminant microorganisms

 Coagulase negative staphylococci

19 (55.9)

Coagulase negative staphylococci

8 (50.0)

 Staphylococcus epidermidis

11 (32.4)

Staphylococcus epidermidis

6 (37.5)

 Corynebacterium species

3 (8.8)

Macrococcus species

1 (6.3)

 Micrococcus luteus

1 (2.9)

Facklamia species

1 (6.3)

Total contaminant microorganisms

34

Total contaminant microorganisms

16

Total microorganisms

193

Total microorganisms

49

  1. aSepsis-3 positive episodes were defined as present if there was an increase in SOFA score by 2 compared to baseline, as well as evidence of infection. Infection in this study was defined as present if the patient was administered intravenous antibiotic therapy within 48 h from admission and during at least 4 days
  2. bStenotrophomonas maltophilia, Proteus vulgaris, Pseudomonas species, Enterococcus species, Globicatella species, Streptococcus mitis group, Lactobacillus species, Micrococcus luteus, Enterobacter cloacae, Enterococcus casseliflavus, Actinotignum schaalii, Helcococcus spp., Eggerthella lenta, Clostridium perfringens, Prevotella species, unidentified gram negative anaerobe coccus, Peptoniphilus species, Peptostreptococcus anaerobius, Candida parapsilosis, Micrococcus luteus (all n = 1)