Table 4 Frequency of prominent repetitive DNA sequences in DuyDNT genome
Motifs | Repetitive sequences | N. meningitidis DuyDNT | N. meningitidis MC58 | N. lactamica Y92–1009 | N. gonorrhoeae NCCP11945 |
|---|---|---|---|---|---|
DUS | GCCGTCTGAA | 1864 | 1935 | 2247 | 445 |
AT-DUS (eDUS) | ATGCCGTCTGAA | 1449 | 1477 | 1718 | 1520 |
vDUS | GTCGTCTGAA | 173 | 165 | 90 | 120 |
AG-DUS | AGGCCGTCTGAA | 181 | 214 | 262 | 192 |
AG-mucDUS | AGGTCGTCTGAA | 102 | 88 | 45 | 83 |
veDUS | ATGTCGTCTGAA | 20 | 19 | 8 | 9 |
DSR3 | ATTCCCNNNNNNNNGGGAAT | 828 | 1378 | 454 | 430 |
Correia | ATAG[CT]GGATTAACAAAAATCAGGAC | 166 | 181 | 50 | 78 |
TATAG[CT]GGATTAAATTTAAACCGGTAC | 1 | 0 | 1 | 23 | |
TATAG[CT]GGATTAACAAAAACCGGTAC | 5 | 8 | 17 | 40 | |
TATAG[CT]GGATTAAATTTAAATCAGGAC | 26 | 24 | 17 | 21 | |
Totala | 151 | 209 | 152 | 131 | |