Table 1 viral signature analyses.
From: Predicting the sensitivity and specificity of published real-time PCR assays
Reference Number | Scope | Year | Target Organism/gene | True Positives | False Positives | False Negatives | Sensitivity |
|---|---|---|---|---|---|---|---|
[6] | Strain | 2004 | Human coronavirus OC43 | 5 | 17 | 0 | 1.00 |
[6] | Strain | 2004 | Human coronavirus 229E | 1 | 0 | 0 | 1.00 |
[7] | Strain | 2004 | Coxsackie virus B3 | 8 | 0 | 2 | 0.80 |
[8] | Strain | 2004 | Coxsackie virus B4 | 3 | 78 | 0 | 1.00 |
[20] | Serotype | 2007 | Influenza H5 strains | 26 | 0 | 402 | 0.06 |
[21] | Species | 2004 | Influenza A MP segment | 238 | 0 | 3726 | 0.06 |
[21] | Species | 2004 | Influenza B HA segment | 131 | 0 | 238 | 0.36 |
[10] | Species | 2002 | Dengue virus | 0 | 0 | 185 | 0.00 |
[16] | Serotype | 2006 | Dengue virus type 1 | 0 | 0 | 47 | 0.00 |
[16] | Serotype | 2006 | Dengue virus type 2 | 0 | 0 | 57 | 0.00 |
[16] | Serotype | 2006 | Dengue virus type 3 | 2 | 0 | 68 | 0.03 |
[16] | Serotype | 2006 | Dengue virus type 4 | 0 | 0 | 11 | 0.00 |
[21] | Species | 2004 | Adenovirus A | 1 | 0 | 0 | 1.00 |
[21] | Species | 2004 | Adenovirus B | 17 | 0 | 3 | 0.85 |
[21] | Species | 2004 | Adenovirus C | 6 | 0 | 0 | 1.00 |
[21] | Species | 2004 | Adenovirus D | 6 | 0 | 0 | 1.00 |
[21] | Species | 2004 | Adenovirus E | 12 | 0 | 0 | 1.00 |
[21] | Species | 2004 | Adenovirus F | 2 | 0 | 0 | 1.00 |
[10] | Species | 2002 | Lassa Virus | 1 | 0 | 14 | 0.08 |
[9] | Species | 2004 | Ebola Sudan | 1 | 0 | 0 | 1.00 |
[9] | Species | 2004 | Ebola Zaire | 5 | 0 | 0 | 1.00 |
[9] | Species | 2004 | Marburg Virus | 13 | 0 | 5 | 0.72 |
[22] | Species | 1996 | Hepatitis C virus | 102 | 0 | 33 | 0.76 |
[10] | Species | 2002 | Rift Valley fever virus | 36 | 0 | 5 | 0.88 |
[23] | Species | 2000 | West Nile Virus 3'NC | 71 | 0 | 13 | 0.85 |
[23] | Species | 2000 | West Nile Virus- ENV | 71 | 0 | 13 | 0.85 |
[15] | Species | 2007 | West Nile virus- RdRp | 49 | 0 | 35 | 0.58 |
[15] | Species | 2007 | Japanese encephalitis virus | 0 | 0 | 43 | 0.00 |
[15] | Species | 2007 | Yellow fever virus | 0 | 0 | 15 | 0.00 |
[15] | Species | 2007 | St. Louis encephalitis virus | 0 | 0 | 2 | 0.00 |
[10] | Species | 2002 | Yellow fever virus | 10 | 0 | 5 | 0.67 |
[24] | Species | 2000 | Hepatitis B virus (1) | 942 | 0 | 56 | 0.94 |
[25] | Species | 2000 | Hepatitis B virus (2) | 641 | 0 | 357 | 0.64 |
[26] | Species | 2004 | Cytomegalovirus | 4 | 0 | 3 | 0.57 |
[21] | Species | 2004 | Cytomegalovirus | 4 | 0 | 3 | 0.57 |
[21] | Species | 2004 | Epstein-Barr (HHV 4) | 4 | 0 | 0 | 1.00 |
[27] | Species | 2005 | Herpes Simplex Virus 1 | 1 | 0 | 0 | 1.00 |
[21] | Species | 2004 | Herpes Simplex Virus 1 | 1 | 0 | 0 | 1.00 |
[27] | Species | 2005 | Herpes Simplex Virus 2 | 1 | 0 | 0 | 1.00 |
[21] | Species | 2004 | Herpes Simplex Virus 2 | 1 | 0 | 0 | 1.00 |
[28] | Species | 1999 | Varicella-Zoster | 19 | 0 | 0 | 1.00 |
[21] | Species | 2004 | Varicella-Zoster | 19 | 0 | 0 | 1.00 |
[21] | Species | 2004 | Human herpesvirus 6 | 3 | 0 | 0 | 1.00 |
[21] | Species | 2004 | Human herpesvirus 7 | 1 | 0 | 0 | 1.00 |
[21] | Species | 2004 | Human herpesvirus 8 | 2 | 0 | 0 | 1.00 |
[29] | Species | 2005 | Mumps virus | 12 | 0 | 5 | 0.71 |
[30] | Species | 2004 | Newcastle Disease irus | 23 | 0 | 15 | 0.61 |
[21] | Species | 2004 | Parainfluenzaviruses-1 | 1 | 0 | 0 | 1.00 |
[21] | Species | 2004 | Parainfluenzaviruses-2 | 4 | 0 | 1 | 0.80 |
[21] | Species | 2004 | Parainfluenzaviruses-3 | 2 | 0 | 0 | 1.00 |
[21] | Species | 2004 | Respiratory syncytial virus | 7 | 0 | 3 | 0.70 |
[21] | Species | 2004 | Human parvovirus B19 | 3 | 0 | 0 | 1.00 |
[21] | Genus | 2004 | Enteroviruses | 170 | 0 | 21 | 0.89 |
[21] | Species | 2004 | JC polyomavirus | 378 | 0 | 2 | 1.00 |
[21] | Species | 2004 | BK polyomavirus | 120 | 378 | 0 | 1.00 |
[31] | Species | 2005 | HIV – type 1 | 283 | 1 | 820 | 0.26 |
[10] | Species | 2002 | Crimean-Congo hemorrhagic fever | 27 | 0 | 21 | 0.56 |
[32] | Genus | 2001 | Enterovirus genus | 171 | 0 | 19 | 0.90 |
[10] | Family | 2002 | Ebola and Marburg | 6 | 0 | 21 | 0.22 |