Origin | Isolate | Pathotype | Virotype | Resistance genes | Minimum inhibitory concentrations (μg/mL)1 | Integron and gene cassettes | Plasmid replicon type | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
CZ | CF | FOX | CTX | CPD | CAZ | CRO | FEP | |||||||
Human | HCT3R-12 | STEC | stx1 | TEM-1, OXA-1, sul1, aac(6’)-Ib, aac(3)-II, tetB, tetE |  > 16 |  > 16 |  > 64 | 16 |  > 32 | 32 | 32 | 2 | I (aadA5-dfrA17) | FIC, FIA, FIB, I1, HI1, Y |
 | HCT3R-13 | STEC | stx2 | TEM-1, OXA-1, sul1, sul2, aac(6’)-Ib, aac(3)-II, tetB, tetE, qnrS |  > 16 |  > 16 |  > 64 |  > 64 |  > 32 |  > 128 |  > 128 |  > 16 | I (aadA5-dfrA17) | FIC, FIA, FIB, Y |
 | HCT3R-14 | STEC | stx1:stx2 | TEM-1, sul1, tetB, tetE |  > 16 |  > 16 | 8 |  > 64 | 1 | 0.5 | 64 |  ≤ 1 | I (aadA5-dfrA17) | FIIA, FIA, I1, Y |
 | HCT3R-16 | STEC/EAEC | stx2:aggR | TEM-1, sul1, aac(6’)-Ib, aac(3)-II, tetB, tetE, qnrS |  > 16 |  > 16 |  > 64 | 4 | 32 | 4 |  ≤ 1 |  ≤ 1 | I (-) | FIA, FIB, I1, HI1, Y |
 | HCT3R-22 | STEC | stx1:stx2 | TEM-1, sul1, sul2, aac(6’)-Ib, tetB, tetE |  > 16 |  > 16 | 8 |  > 64 |  > 32 | 64 |  > 128 |  > 16 | – | FIA, FIB, I1, Y |
Pig | CT3R-15 | ETEC | F4:paa:LT:STb:EAST1 | TEM-1, sul2, cmlA, tetA, tetE, qnrS |  > 16 |  > 16 | 64 | 8 |  > 32 | 8 | 16 |  ≤ 1 | – | FIC, A/C, FIA, FIB, I1, Y |
 | CT3R-16 | ETEC/STEC | F18:paa:LT:STa:Stx2:Stx2e | sul2, cmlA, tetA, tetE |  > 16 |  > 16 |  > 64 | 4 | 32 | 4 |  ≤ 1 |  ≤ 1 | I (aadA5-dfrA17) | FIC, FIA, FIB, I1, HI1, Y |
 | CT3R-18 | - | – | sul1, sul2, tetA, tetB, tetE, qnrS |  > 16 |  > 16 |  > 64 | 8 |  > 32 | 8 | 16 |  ≤ 1 | I (aadA1- aadA2- aadB-cmlA6) | A/C, FIB, I1, Y |
 | CT3R-22 | ETEC | F4:paa:LT:STb:EAST1 | sul1, sul2, tetA, tetE |  > 16 |  > 16 | 32 | 8 |  > 32 | 4 | 8 |  ≤ 1 | I (aadA2-dfrA12) | FIC, FIB, I1, HI1, N |
 | CT3R-23 | ETEC | F4:paa:LT:STb:EAST1 | sul2, tetA, tetE, qnrS |  > 16 |  > 16 | 32 | 4 |  > 32 | 4 | 8 |  ≤ 1 | – | FIC, FIB, I1, Y |
 | CT3R-24 | ETEC/STEC | F18:paa:LT:STb:Stx2:Stx2e:EAST1 | sul2, cmlA, tetA, tetE |  > 16 |  > 16 |  > 64 | 8 |  > 32 | 16 | 32 |  ≤ 1 | I (-) | FIC, A/C, FIB, I1, HI1, Y |
 | CT3R-26 | ETEC | F4:paa:LT:STb:EAST1 | sul2, cmlA, tetA, tetE |  > 16 |  > 16 | 32 | 4 | 32 | 8 |  ≤ 1 |  ≤ 1 | I (-) | A/C, FIB, I1 |
 | CT3R-28 | ETEC | STa:STb:EAST1 | TEM-1, sul2, cmlA, tetA, tetE | 16 | 16 | 64 | 4 |  > 32 | 4 |  ≤ 1 |  ≤ 1 | I (-) | A/C, FIB, HI1, N, HI2, Y |
 | CT3R-30 | ETEC | F5:paa | TEM-1, sul2, cmlA, aac(3)-II, tetA, tetB, tetE |  > 16 |  > 16 |  > 64 | 8 |  > 32 | 16 | 16 |  ≤ 1 | I (aadA2-dfrA12) | A/C, FIB, HI1, N, L/M |
 | CT3R-31 | ETEC/STEC | F18:LT:Stx2e | TEM-1, sul2, cmlA, tetA, tetB, tetE |  > 16 |  > 16 | 64 | 4 |  > 32 | 4 | 2 |  ≤ 1 | I (-) | FIB, I1, Y |
 | CT3R-32 | ETEC/STEC | F18:LT:STa:Stx2e | TEM-1, OXA-1, sul1, sul2, cmlA, aac(6’)-Ib, tetA, tetE |  > 16 |  > 16 | 64 | 4 |  > 32 | 8 | 2 |  ≤ 1 | I (-) | FIB, I1, Y |
 | CT3R-33 | ETEC | F4:LT:STb:EAST1 | TEM-1, sul2, catA1, aac(3)-II, tetA, tetE, qnrS |  > 16 |  > 16 |  > 64 | 16 |  > 32 | 32 | 16 |  ≤ 1 | I (aadA2-aadA28-dfrA12) | FIC, A/C, FIA, FIB, I1, N |
 | CT3R-34 | ETEC | F4:LT:STb:EAST1 | TEM-1, sul2, aac(3)-II, tetA, tetE, qnrS |  > 16 |  > 16 |  > 64 | 8 |  > 32 | 32 | 16 |  ≤ 1 | I (aadA2-linF) | FIC, A/C, FIA, FIB, I1, N |
 | CT3R-35 | ETEC/STEC | F18:LT:STa:Stx2e | cmlA, tetA, tetE |  > 16 |  > 16 |  > 64 | 4 |  > 32 | 8 | 2 |  ≤ 1 | I (aadA1) | FIB, I1, HI1, L/M, Y |
 | CT3R-36 | ETEC/STEC | F18:LT:STa:Stx2e | TEM-1, sul1, cmlA, tetA, tetE |  > 16 |  > 16 | 32 | 4 |  > 32 | 32 | 2 | 2 | I (aadA2- aadA12- aadA23) | FIB, I1, HI1, L/M, Y |
 | CT3R-37 | ETEC/STEC | F18:LT:STa:Stx2e | TEM-1, cmlA, tetA, tetE |  > 16 |  > 16 | 64 | 4 | 32 | 8 | 2 |  ≤ 1 | I(-) | FIC, FIB, I1, HI1, L/M, Y |
 | CT3R-38 | ETEC | F18:AIDA | TEM-1, sul2, cmlA, tetA |  > 16 |  > 16 | 64 | 16 |  > 32 | 16 | 16 |  ≤ 1 | I (aadA2-dfrA12) II (aadA1-sat2-dfrA1) | A/C, I1, Y |
 | CT3R-39 | ETEC/STEC | F18:paa:STa:Stx2e | TEM-1, cmlA, tetA, tetE |  > 16 |  > 16 | 64 | 4 | 32 | 8 |  ≤ 1 |  ≤ 1 | I (aadA2-linF) | I1, HI1, L/M, Y |
 | CT3R-40 | ETEC | F4:F18:LT:STa:STbEAST1 | TEM-1, sul1, cmlA, tetA, tetE |  > 16 |  > 16 | 64 | 4 |  > 32 | 8 | 16 |  ≤ 1 | I (aadA1-dfrA1) | FIC, FIB, I1, HI1, L/M, Y |
 | CT3R-41 | ETEC/STEC | F18:LT:Stx2e | TEM-1, OXA-1, sul1, sul2, aac(6’)-Ib, tetA, tetE, qnrS |  > 16 |  > 16 | 64 | 4 | 32 | 8 |  ≤ 1 |  ≤ 1 | I (aadA1-dfrA1) | FIC, FIB, I1, N, HI2 |
 | CT3R-42 | ETEC | F4:LT:STb:EAST1 | TEM-1, sul2, aac(3)-II, tetA, tetE, qnrS |  > 16 |  > 16 |  > 64 | 16 |  > 32 | 32 | 16 |  ≤ 1 | I (-) | FIC, A/C, FIA, FIB, I1, N, Y |
 | CT3R-43 | ETEC | F18:LT:STa:STbEAST1 | TEM-1, sul1, sul2, tetA, tetE |  > 16 |  > 16 |  > 64 | 8 |  > 32 | 4 | 8 |  ≤ 1 | I (aadA7-aac(3)-Id) | FIC, A/C, FIB, I1, Y |
 | CT3R-44 | ETEC | F4:LT:STb:EAST1 | TEM-1, sul2, aac(3)-II, tetA, tetE, qnrS |  > 16 |  > 16 |  > 64 | 32 |  > 32 | 128 | 64 |  ≤ 1 | I (-) | FIC, A/C, FIA, FIB, I1, N, Y |
 | CT3R-45 | ETEC | AIDA:STb:EAST1 | TEM-1, sul1, sul2, tetA, tetE |  > 16 |  > 16 | 64 | 8 |  > 32 | 16 | 32 |  ≤ 1 | I (aadA1) | A/C, FIB, HI1, N, Y |
 | CT3R-46 | ETEC | F4:LT:STb:EAST-1 | TEM-1, sul2, cmlA, aac(3)-II, tetA, tetE |  > 16 |  > 16 | 64 | 8 |  > 32 | 32 | 16 |  ≤ 1 | I (aadA2-dfrA12) | FIC, A/C, FIB, Y |
 | CT3R-47 | ETEC | F4:LT:STb:EAST-1 | sul2, aac(3)-II, tetA, tetE, qnrS |  > 16 |  > 16 | 32 | 8 |  > 32 | 4 | 8 |  ≤ 1 | I (-) | FIC, A/C, FIB, I1 |
 | CT3R-50 | - | - | sul2, tetA |  > 16 |  > 16 | 64 | 8 |  > 32 | 32 | 16 |  ≤ 1 | - | FIC, A/C, FIB, N |
 | CT3R-51 | ETEC/STEC | F18:LT:Stx2e:paa | TEM-1, sul2, cmlA, tetA, qnrS |  > 16 |  > 16 | 64 | 8 |  > 32 | 8 | 16 |  ≤ 1 | I (-) | A/C, I1 |
 | CT3R-52 | ETEC/STEC | F18:LT:STa:Stx2e:paa | TEM-1, sul1, sul2, cmlA, aac(6’)-Ib, aac(3)-II, tetA, tetB, tetE |  > 16 |  > 16 |  > 64 | 8 |  > 32 | 16 | 16 |  ≤ 1 | I (arr-3-aadA16-dfrA27) | FIC, FIA, FIB, I1, Y |
 | CT3R-53 | STEC | F18:Stx2e | TEM-1, sul1, sul2, tetA, tetE |  > 16 |  > 16 | 64 | 4 |  > 32 | 4 | 2 |  ≤ 1 | I (aadA2-dfrA12) | I1, HI1, N, Y |
 | CT3R-55 | ETEC | F18:paa:AIDA:STb:EAST1 | TEM-1, cmlA, tetA, tetE |  > 16 |  > 16 | 64 | 8 |  > 32 | 8 | 16 |  ≤ 1 | (-) | I1, N, Y |