Target gene | Sequence (5’ → 3’) | Size (bp) | References |
---|---|---|---|
B-lactamases | |||
 TEM | F: CATTTCCGTGTCGCCCTTATTC | 800 | [18] |
 | R: CGTTCATCCATAGTTGCCTGAC | ||
 SHV | F: AGCCGCTTGAGCAAATTAAAC | 713 | [18] |
 | R: ATCCCGCAGATAAATCACCAC | ||
 OXA | F: GGCACCAGATTCAACTTTCAAG | 564 | [18] |
 | R: GACCCCAAGTTTCCTGTAAGTG | ||
 CTX-M group 1 | F: TTAGGAARTGTGCCGCTGYA | 688 | [18] |
 | R: CGATATCGTTGGTGGTRCCAT | ||
 CTX-M group 2 | F: CGTTAACGGCACGATGAC | 404 | [18] |
 | R: CGATATCGTTGGTGGTRCCAT | ||
 CTX-M group 9 | F: TCAAGCCTGCCGATCTGGT | 561 | [18] |
 | R: TGATTCTCGCCGCTGAAG | ||
 CTX-M group 8/25 | F: AACRCRCAGACGCTCTAC | 326 | [18] |
 | R: TCGAGCCGGAASGTGTYAT | ||
 ACC | F: CACCTCCAGCGACTTGTTAC | 346 | [18] |
 | R: GTTAGCCAGCATCACGATCC | ||
 FOX | F: CTACAGTGCGGGTGGTTT | 162 | [18] |
 | R: CTATTTGCGGCCAGGTGA | ||
 MOX | F: GCAACAACGACAATCCATCCT | 895 | [18] |
 | R: GGGATAGGCGTAACTCTCCCAA | ||
 CIT | F: CGAAGAGGCAATGACCAGAC | 538 | [18] |
 | R: ACGGACAGGGTTAGGATAGY | ||
 DHA | F: TGATGGCACAGCAGGATATTC | 997 | [18] |
 | R: GCTTTGACTCTTTCGGTATTCG | ||
 EBC | F: CGGTAAAGCCGATGTTGCG | 683 | [18] |
 | R: AGCCTAACCCCTGATACA | ||
 GES | F: AGTCGGCTAGACCGGAAAG | 399 | [18] |
 | R: TTTGTCCGTGCTCAGGAT | ||
 PER | F: GCTCCGATAATGAAAGCGT | 520 | [18] |
 | R: TTCGGCTTGACTCGGCTGA | ||
 VEB | F: CATTTCCCGATGCAAAGCGT | 648 | [18] |
 | R: CGAAGTTTCTTTGGACTCTG | ||
Plasmid-mediated quinolone | |||
 qnrA | F: TCAGCAAGAGGATTTCTCA | 627 | [19] |
 | R: GGCAGCACTATTACTCCCA | ||
 qnrB | F: CGACCTGAGCGGCACTGAAT | 515 | [20] |
 | R: TGAGCAACGATGCCTGGTAG | ||
 qnrC | F: GGGTTGTACATTTATTGAATC | 447 | [21] |
 | R: TCCACTTTACGAGGTTCT | ||
 qnrD | F: CGAGATCAATTTACGGGGAATA | 582 | [22] |
 | R: AACAAGCTGAAGCGCCTG | ||
 qnrS | F: ACCTTCACCGCTTGCACATT | 571 | [20] |
 | R: CCAGTGCTTCGAGAATCAGT | ||
 qepA | F: CGTGTTGCTGGAGTTCTTC | 403 | [23] |
 | R: CTGCAGGTACTGCGTCATG | ||
Aminoglycoside-modifying enzymes | |||
 aac(3)-II | F: TGAAACGCTGACGGAGCCTC | 369 | [24] |
R: GTCGAACAGGTAGCACTGAG | |||
 ant(2’’)-I | F: GGGCGCGTCATGGAGGAGTT | 740 | [24] |
R: TATCGCGACCTGAAAGCGGC | |||
Chloramphenicol | |||
 catA1 | F: AGTTGCTCAATGTACCTATAACC | 547 | [25] |
R: TTGTAATTCATTAAGCATTCTGCC | |||
 cmlA | F: CCGCCACGGTGTTGTTGTTATC | 698 | [25] |
R: CACCTTGCCTGCCCATCATTAG | |||
Sulfonamide | |||
 sul1 | F: CTTCGATGAGAGCCGGCGGC | 433 | [26] |
R: GCAAGGCGGAAACCCGCGCC | |||
 sul2 | F: CGGCATCGTCAACATAACC | 722 | [27] |
R: GTGTGCGGATGAAGTCAG | |||
Tetracyclines | |||
 tetA | F: GTAATTCTGAGCACTGTCGC | 956 | [28] |
R: CTGCCTGGACAACATTGCTT | |||
 tetB | F: CTCAGTATTCCAAGCCTTTG | 414 | [28] |
R: ACTCCCCTGAGCTTGAGGGG | |||
 tetC | F: CCTCTTGCGGGATATCGTCC | 505 | [28] |
R: GGTTGAAGGCTCTCAAGGGC | |||
 tetD | F: GGATATCTCACCGCATCTGC | 436 | [28] |
R: CATCCATCCGGAAGTGATAGC | |||
 tetE | F: AAACCACATCCTCCATACGC | 278 | [28] |
R: AAATAGGCCACAACCGTCAG | |||
 tetG | F: GCTCGGTGGTATCTCTGCTC | 468 | [28] |
R: AGCAACAGAATCGGGAACAC | |||
Integrons and cassettes | |||
 Class 1 integron | F: GCCTTGCTGTTCTTCTACGG | 558 | [29] |
R: GATGCCTGCTTGTTCTACGG | |||
 Class 1 cassettes | F: GGCATCCAAGCAGCAAG | variable | [29] |
R: AAGCAGACTTGACCTGA | |||
 Class 2 integron | F: CACGGATATGCGACAAAAAGGT | 788 | [30] |
R: GTAGCAAACGAGTGACGAAATG | |||
 Class 2 cassettes | F: CGGGATCCCGGACGGCATGCACGATTTGT | variable | [30] |
R: GATGCCATCGCAAGTACGAG |