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Table 2 Molecular strain typing of the isolates

From: Molecular epidemiology and antimicrobial resistance features of Acinetobacter baumannii clinical isolates from Pakistan

Sample ID

blaOXA-51-like allele

ampC allele

blaOXA-51-like- and ampC-based clusterization

Whole genome sequencing

Multilocus sequence typing

ST profileb

ST

CC

Ab-Pak-Lah-01

ISAba1, blaOXA-66

ISAba1, ampC-2

Individual strain

QQPR00000000.1

2, 2, 2, 2, 2, 2, 2

2

2

Ab-Pak-Lah-02

blaOXA-66

ISAba1, ampC-19

Ab-Pak-cluster-1

ND

–

–

 

Ab-Pak-Lah-03

blaOXA-66

ISAba1, ampC-19

Ab-Pak-cluster-1

ND

–

–

 

Ab-Pak-Lah-04

blaOXA-66

ISAba1, ampC-19

Ab-Pak-cluster-1

SMUA00000000.1

2, 2, 2, 2, 2, 2, 2

2

2

Ab-Pak-Lah-06

blaOXA-66

ISAba1, ampC-19

Ab-Pak-cluster-1

ND

–

–

 

Ab-Pak-Lah-07

blaOXA-66

ISAba1, ampC-19

Ab-Pak-cluster-1

ND

–

–

 

Ab-Pak-Lah-08

blaOXA-66

ISAba1, ampC-19

Ab-Pak-cluster-1

QQPS00000000.1

2, 2, 2, 2, 2, 2, 2

2

2

Ab-Pak-Lah-09

blaOXA-66

ISAba1, ampC-19

Ab-Pak-cluster-1

ND

–

–

 

Ab-Pak-Lah-10

blaOXA-66

ISAba1, ampC-19

Ab-Pak-cluster-1

ND

–

–

 

Ab-Pak-Lah-11

blaOXA-66

ISAba1, ampC-19

Ab-Pak-cluster-1

ND

–

–

 

Ab-Pak-Lah-12

blaOXA-66

ISAba1, ampC-19

Ab-Pak-cluster-1

ND

–

–

 

Ab-Pak-Lah-13

blaOXA-66

ISAba1, ampC-19

Ab-Pak-cluster-1

ND

–

–

 

Ab-Pak-Lah-14

blaOXA-371

ISAba1, ampC-3

Ab-Pak-cluster-6A

QQPT00000000.1

1, 1, 1, 1, 5, 1, 1

1

1

Ab-Pak-Lah-15

blaOXA-66

ISAba1, ampC-19

Ab-Pak-cluster-1

ND

–

–

 

Ab-Pak-Lah-16

blaOXA-66

ISAba1, ampC-19

Ab-Pak-cluster-1

ND

–

–

 

Ab-Pak-Lah-17

blaOXA-66

ISAba1, ampC-19

Ab-Pak-cluster-1

ND

–

–

 

Ab-Pak-Pesh-01

blaaOXA-65

ampC-43

Ab-Pak-cluster-7

SMUB00000000.1

41, 42, 13, 1, 5, 4, 14

158

158

Ab-Pak-Pesh-02

blaaOXA-65

ampC-43

Ab-Pak-cluster-7

ND

–

–

 

Ab-Pak-Pesh-03

blaOXA-66

ISAba1, ampC-2

Ab-Pak-cluster-2

ND

–

–

 

Ab-Pak-Pesh-04

blaOXA-64

ampC-25

Individual strain

SMUC00000000.1

3, 3, 2, 4, 7, 2, 4

25

25

Ab-Pak-Pesh-05

blaOXA-371

ISAba1, ampC-8

Ab-Pak-cluster-6B

SMUD00000000.1

2, 1, 2, 1, 5, 1, 1

1106

1

Ab-Pak-Pesh-06

blaOXA-66

ISAba1, ampC-2

Ab-Pak-cluster-2

QQPU00000000.1

2, 2, 2, 2, 2, 2, 2

2

2

Ab-Pak-Pesh-07

blaaOXA-65

ampC-43

Ab-Pak-cluster-7

QQPV00000000.1

41, 42, 13, 1, 5, 4, 14

158

158

Ab-Pak-Pesh-08

blaOXA-66

ISAba1, ampC-2

Ab-Pak-cluster-2

ND

–

–

 

Ab-Pak-Pesh-09

blaaOXA-65

ampC-43

Ab-Pak-cluster-7

ND

–

–

 

Ab-Pak-Pesh-10

blaOXA-66

ISAba1, ampC-19

Ab-Pak-cluster-1

QQPW00000000.1

2, 2, 2, 2, 2, 2, 2

2

2

Ab-Pak-Pesh-11

blaOXA-66

ISAba1, ampC-2

Ab-Pak-cluster-2

SMUE00000000.1

2, 2, 2, 2, 2, 2, 2

2

2

Ab-Pak-Pesh-13

blaOXA-66

ISAba1, ampC-2

Ab-Pak-cluster-2

SMUF00000000.1

2, 2, 2, 2, 2, 2, 2

2

2

Ab-Pak-Pesh-14

blaOXA-69

ISAba1, ampC-78

Ab-Pak-cluster-5

SMUG00000000.1

1, 1, 1, 1, 5, 1, 1

1

1

Ab-Pak-Pesh-15

blaOXA-66

ISAba1, ampC-19

Ab-Pak-cluster-1

ND

–

–

 

Ab-Pak-Pesh-16

blaOXA-66

ISAba1, ampC-19

Ab-Pak-cluster-1

SMUQ00000000.1

2, 2, 2, 2, 2, 2, 2

2

2

Ab-Pak-Pesh-17

blaOXA-66

ISAba1, ampC-19

Ab-Pak-cluster-1

ND

–

–

 

Ab-Pak-Pesh-18

blaOXA-66

ISAba1, ampC-19

Ab-Pak-cluster-1

ND

–

–

 

Ab-Pak-Pesh-19

blaOXA-66

ISAba1, ampC-2

Ab-Pak-cluster-2

ND

–

–

 

Ab-Pak-Pesh-20

blaOXA-69

ampC-1

Ab-Pak-cluster-4

QQPX00000000.1

1, 1, 1, 1, 5, 1, 1

1

1

Ab-Pak-Pesh-21

blaOXA-66

ISAba1, ampC-20

Ab-Pak-cluster-3

ND

–

–

 

Ab-Pak-Pesh-22

blaOXA-68

ISAba1, ampC-79

Individual strain

SMUR00000000.1

1, 3, 10, 1, 4, 4, 4

23

23

Ab-Pak-Pesh-23

blaOXA-66

ISAba1, ampC-19

Ab-Pak-cluster-1

ND

–

–

 

Ab-Pak-Pesh-24

blaOXA-66

ISAba1, ampC-19

Ab-Pak-cluster-1

ND

–

–

 

Ab-Pak-Pesh-25

blaOXA-66

ISAba1, ampC-19

Ab-Pak-cluster-1

QQPY00000000.1

2, 2, 2, 2, 2, 2, 2

2

2

Ab-Pak-Pesh-26

blaOXA-371

ISAba1, ampC-3

Ab-Pak-cluster-6A

SMUH00000000.1

1, 1, 1, 1, 5, 1, 1

1

1

Ab-Pak-Pesh-27

blaOXA-69

ampC-1

Ab-Pak-cluster-4

SMUI00000000.1

1, 1, 1, 1, 5, 1, 1

1

1

Ab-Pak-Pesh-28

blaaOXA-65

ampC-43

Ab-Pak-cluster-7

QQPZ00000000.1

41, 42, 13, 1, 5, 4, 14

158

158

Ab-Pak-Pesh-29

blaOXA-69

ISAba1, ampC-78

Ab-Pak-cluster-5

SMUJ00000000.1

1, 1, 1, 1, 5, 1, 1

1

1

Ab-Pak-Pesh-30

blaOXA-69

ampC-1

Ab-Pak-cluster-4

ND

–

–

 

Ab-Pak-Pesh-31

blaOXA-66

ISAba1, ampC-20

Ab-Pak-cluster-3

QQQA00000000.1

2, 2, 2, 2, 2, 2, 2

2

2

Ab-Pak-Pesh-32

blaOXA-66

ISAba1, ampC-20

Ab-Pak-cluster-3

ND

–

–

 

Ab-Pak-Pesh-33

blaOXA-66

ISAba1, ampC-19

Ab-Pak-cluster-1

QQQB00000000.1

2, 2, 2, 2, 2, 2, 2

2

2

Ab-Pak-Pesh-34

blaOXA-66

ISAba1, ampC-19

Ab-Pak-cluster-1

ND

–

–

 

Ab-Pak-Pesh-35

blaOXA-66

ISAba1, ampC-2

Ab-Pak-cluster-2

ND

–

–

 

Ab-Pak-Pesh-36

blaOXA-66

ISAba1, ampC-20

Ab-Pak-cluster-3

SMUK00000000.1

2, 2, 2, 2, 2, 2, 2

2

2

Ab-Pak-Pesh-37

blaOXA-371

ISAba1, ampC-8

Ab-Pak-cluster-6B

QQQC00000000.1

2, 1, 2, 1, 5, 1, 1

1106

1

  1. ND not determined, ST sequence type, CC clonal complex
  2. aThe nucleotide sequence of blaOXA-65 in our isolates had 3 synonymous nucleotide substitutions in comparison to the first GenBank-deposited allele for OXA-65 (GenBank: NG_049805.1)
  3. bThe ST profiles consist of 7 allele numbers corresponding to cpn60, fusA, gltA, pyrG, recA, rplB, and rpoB, respectively (https://pubmlst.org/abaumannii/)