Table 4 Detail of the results for pathogen species identification from nanopore data with seven samples
From: Identification of pathogens in culture-negative infective endocarditis cases by metagenomic analysis
Sample ID | Pathogen species | Genome size | Reads num | Unique reads num | Query length | Relative abundance (%) | Coverage (%) | Depth |
|---|---|---|---|---|---|---|---|---|
A1.1 | Streptococcus gordonii | 2,196,662 | 24 | 23 | 25,269 | 100.00 | 1.11 | 1.009 |
A1.2 | Streptococcus gordonii | 2,196,662 | 16 | 16 | 22,003 | 100.00 | 0.95 | 1.000 |
A2.1 | Streptococcus oralis | 1,958,690 | 13 | 13 | 22,945 | 100.00 | 1.08 | 1.022 |
A2.2 | Streptococcus oralis | 1,958,690 | 25 | 23 | 19,502 | 100.00 | 1.18 | 1.016 |
A3 | Coxiella burnetii | 1,995,488 | 68 | 68 | 67,040 | 100.00 | 2.72 | 1.057 |
A4 | Bartonella quintana | 1,581,384 | 2106 | 2081 | 3,099,223 | 100.00 | 81.75 | 2.091 |
A5 | Streptococcus oralis | 1,958,690 | 317 | 302 | 601,776 | 94.72 | 23.95 | 1.165 |
A6 | Streptococcus sanguinis | 2,388,435 | 42 | 42 | 76,221 | 100.00 | 3.02 | 1.056 |
A7 | Streptococcus anginosus | 2,233,640 | 3379 | 3302 | 4,221,132 | 90.77 | 66.98 | 2.755 |