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TableĀ 4 Detail of the results for pathogen species identification from nanopore data with seven samples

From: Identification of pathogens in culture-negative infective endocarditis cases by metagenomic analysis

Sample ID Pathogen species Genome size Reads num Unique reads num Query length Relative abundance (%) Coverage (%) Depth
A1.1 Streptococcus gordonii 2,196,662 24 23 25,269 100.00 1.11 1.009
A1.2 Streptococcus gordonii 2,196,662 16 16 22,003 100.00 0.95 1.000
A2.1 Streptococcus oralis 1,958,690 13 13 22,945 100.00 1.08 1.022
A2.2 Streptococcus oralis 1,958,690 25 23 19,502 100.00 1.18 1.016
A3 Coxiella burnetii 1,995,488 68 68 67,040 100.00 2.72 1.057
A4 Bartonella quintana 1,581,384 2106 2081 3,099,223 100.00 81.75 2.091
A5 Streptococcus oralis 1,958,690 317 302 601,776 94.72 23.95 1.165
A6 Streptococcus sanguinis 2,388,435 42 42 76,221 100.00 3.02 1.056
A7 Streptococcus anginosus 2,233,640 3379 3302 4,221,132 90.77 66.98 2.755