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Table 2 Detail of the results for pathogen species identification from NGS (BGI) data

From: Identification of pathogens in culture-negative infective endocarditis cases by metagenomic analysis

Sample ID

Pathogen species

Genome size

Reads num

Unique reads num

Relative abundance (%)

Coverage (%)

Depth

A1

Streptococcus gordonii

2,196,662

4465

4260

82.40

21.33

1.4380

A2

Streptococcus oralis

1,958,690

31,754

25,275

81.01

68.50

3.5609

A3

Coxiella burnetii

1,995,488

4014

3921

100.00

20.32

1.1890

A4

Bartonella quintana

1,581,384

29,676

29,438

99.55

77.68

2.9408

A5

Streptococcus oralis

1,958,690

68,435

54,881

81.74

75.74

6.8056

A6

Streptococcus sanguinis

2,388,435

380

370

86.20

2.33

1.0434

A7

Streptococcus anginosus

2,233,640

47,829

45,880

87.82

61.85

5.1198