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Table 6 Virulence and antimicrobial resistance genes detected by microarray analysis exclusively among E. coli B2, D and F isolates from UTIs patients

From: An evaluation of multidrug-resistant Escherichia coli isolates in urinary tract infections from Aguascalientes, Mexico: cross-sectional study

  Type of infection
Hospital-acquired (n = 4) Community-acquired (n = 14)
Virulence genes (mean) 39 32
Antimicrobial resistance genes (mean) 9 6
Phylo-groups B2 (n = 2) and D (n = 2) B2 (n = 9), D (n = 3) and F (n = 2)
Virulence genes function
 Resistance blaTEM, blaOXA-1, blaPSE-1, blaCTX-M-15, blaCMY-2, mphA, ant(3″)-Ia (aadA1), aac(3)-IIa (aacC2), tet(A), tet(B), tet(30), tet(R), sulI sulII, qnrA, aac(6′)-Ib-cr, class 1 integron blaTEM, blaOXA-1, blaOXA-9, blaPSE-1, blaCTX-M-15, blaCTX-M-12, blaOXY/K1, ant(3″)-Ia (aadA1), aac(3)-IIa (aacC2), aac(3)-IV, aph(3′)-Ia (aphA1), aph(3′)-IIa (aphA2), aph3 (strA), dhfrI, dhfrVII, catI, sulI, sulII, tet(A), tet(B), tet(30), mphA, class 1 integron, class 2 integron
 Adhesins afaD, afaD8, afaE1, afaE2, afaE5, bfpA, fimC, ibeB, csgA, csgE, f165(1)A, fimA, fimH, iha, lpfA(O113), papA(10), papA(11), papA(16), papA(8), papC, papGI2, fitA, sfaHII, sfaD afaE1, afaE2, afaE5, cofA, lpfA2, fimC, csgA, csgE, csuA, F17b-A, F17d-A, facA, lpfA1, fimA, iha, lpfA(O113), lpfA, papA(8), papA(9), papA(10), papA(12), papA(13), papA(15), papA(40), papA(48), papC, papGII, papGIV, fitA, sfaHII, sfaA
 Colcins and microsins cvaC, mchB cda, ce1a, cib, cvaC, mcbA.
 Toxins Sat astA, astA(2), cdtB-4, cnf1, sat
 Iron acquisition or transport system chuA, fepC, fyuA, iroN, iroN(2), irp1, irp2, iucD, iutA, iutA(2), iutA(UPEC), sitA, sitD chuA, fepC, fimH, fyuA, iroN(2), irp1, irp2, iucD, iutA, iutA(2), iutA(UPEC), sitA, sitD
 Capsular and somatic antigens kpsMTII, neuC kpsMTII, neuA, neuC
 Locus of enterocyte effacement (LEE) eae(delta) eae(lambda), espG, esta1
 ETT2 elements eivG, eprJ eivG, eprJ, epaS
 Haemolysins and hemagglutinins hlyA, hlyE, hra1 bmaE, hlyA, hlyE, hra1.
 Various functions agn43, capU, ccdB, deoK, fliC, gad, iss, iss(3), malX, ompA, ompT, ompT(2), senB, traT agn43, capU, ccdB, ibeA, ibeB, deoK, eaf, fliC, fliC(H7), gad, invX, iss, iss(3), malX, ompA, ompT, ompT(2), senB, traT
 Newly recognized or putative E. coli virulence genes artJ, b1121, b1432, gimB(orf1), mviM, mviN, shf, usp, virK artJ, b1121, mviM, mviN, set, shf, usp, virK