Primer pair | Target | Sequence (5´–3´) | Annealing temperature (◦C) | Amplicon size (bp) | References |
---|---|---|---|---|---|
Primer 1 16s-8F | 16S rDNA | AGAGTTTGATCMTGGCTCAG | 60 | 456 | [36] |
Primer 2 16s-517 | 16S rDNA | ATTACCGCGGCTGCTGG | 60 | 456 | [37] |
IntI1_F | Class 1 integrase gene | CCTCCCGCACGATGATC | 55 | 270 | [38] |
IntI1_R | TCCACGCATCGTCAGGC | ||||
IntI2_F | Class 2 integrase gene | TTATTGCTGGGATTAGGC | 50 | 233 | [39] |
IntI2_R | ACGGCTACCCTCTGTTATC | ||||
5′_CS | Class 1 integron variable region | GGCATCCAAGCAGCAAG | 58.5 | Variable | [40] |
3′_CS | AAGCAGACTTGACCTGA | ||||
Hep_F | Class 2 integron variable region | CGGGATCCCGGACGGCATGCACGATTTGTA | 60 | Variable | [41] |
Hep_R | GATGCCATCGCAAGTACGAG | ||||
Sul1-F | sul1 | CGGCGTGGGCTACCTGAACG | 60 | 433 | [42] |
Sul1-R | GCCGATCGCGTGAAGTTCCG | ||||
Sul2-F | sul2 | GCGCTCAAGGCAGATGGCATT | 60 | 293 | [42] |
Sul2-R | GCGTTTGATACCGGCACCCGT | ||||
pVP440sul3F | sul3 | TCAAAGCAAAATGATATGAGC | 55 | 787 | [42] |
pVP440sul3R | TTTCAAGGCATCTGATAAAGAC | ||||
qacEΔ1F | qacEΔ1F | ATC GCA ATA GTT GGC GAA GT | 58 | 800 | [43] |
sul1-B | sul1-B | GCA AGG CGG AAA CCC GCG CC | 58 | Â | [44] |
aph (3″)c-F | aph (3″)c | GCTCAAAGGTCGAGGTGTGG | 55 | 515 | [27] |
aph (3″)c-R | CCAGTTCTCTTCGGCGTTAG | 55 | 515 | [27] | |
ant (3″)b-F | ant (3″)b | CAGCGCAATGACATTCTTGC | 55 | 295 | [27] |
ant (3″)b-F | GTCGGCAGCGACA(C/T)CCTTCG | 55 | 295 | [27] | |
aph(6)-1dd-F | aph(6)-1dd | GACTCCTGCAATCGTCAAGG | 55 | 560 | [27] |
aph(6)-1dd-R | GCAATGCGTCTAGGATCGAG | 55 | 560 | [27] | |
tet(A)-F | tet(A) | TTGGCATTCTGCATTCACTC | 60 | 494 | [45] |
tet(A)-R | GTATAGCTTGCCGGAAGTCG | 60 | 494 | [45] | |
tet(B)-F | tet(B) | CAGTGCTGTTGTTGTCATTAA | 60 | 571 | [45] |
tet(B)-R | GCTTGGAATACTGAGTGTAA | 60 | 571 | [45] | |
tet(E)-F | tet(E) | TATTAACGGGCTGGCATTTC | 55 | 544 | [45] |
tet(E)-R | AGCTGTCAGGTGGGTCAAAC | 55 | 544 | [45] | |
tet(M)-F | Â | ACACGCCAGGACATATGGAT | 55 | 536 | [45] |
tet(M)-R | tet(M) | ATTTCCGCAAAGTTCAGACG | 55 | 536 | [45] |
tet(30)-F | tet(30) | CCGTCATGCAATTTGTGTTC | 55 | 550 | [45] |
tet(30)-R | TAGAGCACCCAGATCGTTCC | 55 | 550 | [45] | |
SHV_F | bla SHV | GCGAAAGCCAGCTGTCGGGC | 62 | 538 | [46] |
SHV_R | GATTGGCGGCGCTGTTATCGC | 62 | 538 | [46] | |
CTX_F | bla CTX-M | GTGCAGTACCAGTAAAGTTATGG | 55 | 538 | [46] |
CTX_R | CGCAATATCATTGGTGGTGCC | Â | 538 | [46] | |
TEM_F | bla TEM | AAAGATGCTGAAGATCA | 44 | 425 | [46] |
TEM_R | TTTGGTATGGCTTCATTC | Â | 425 | [46] |