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Table 2 Target genes and primer sequences used for screeningof infectious microorganisms

From: Simple multiplex PCR assays to detect common pathogens and associated genes encoding for acquired extended spectrum betalactamases (ESBL) or carbapenemases from surgical site specimens in Vietnam

Pathogens

Accession number

Forward/Reverse Primer (5ā€² to 3ā€²)

Size (bp)

Final concentration (mM)

C. albicans

Z48339

GTGGGTGGTAAATTCCATCTAAAGCTA

243

0.2

CCGTGCCACATTCCTCCGC

0.2

P. aeruginosa

AF116258

CCCGAATGTCGGCATCATTCTC

411

0.2

CGGTAGACCTCGCGCTTGAA

0.2

S. aureus

STAAROA

AAGGGCGAAATAGAAGTGCCGG

515

0.2

ATGGTCGGTTCCTTAGAAAACAAACTTG

.02

A. baumannii

JX470958

TTGGGGCCTTTGAGGCTTTAGTG

599

0.2

TGGTGCAACAAACTCCCATGGT

0.2

E. coli

S-uidA

GTCGCGAGTGAAGATCCCTTTC

773

0.2

GCATTAATGGACTGGATTGGGGC

0.2

K. pneumoniae

Kp-aldA

CCTTGTCTTTAAACGCGCGC

332

0.2

TTTTTCGCCGCAGCGG

0.2

S. epidermidis

AF298800

CGGTATCTTAGTTGTATCTGCTGC

637

0.2

AGATAATACGTATACTTCAGCTTTGAATTTTGTG

0.2

S. pneumoniae

Sp LytA

CAACCGTACAGAATGAAGCGGATTAT

701

0.2

GTCCTTGTACTTGACCCAGCCT

0.2