Table 1 Details of leptospiral strains and isolates used for MLST based
Labels | Genome Species | Serogroup | Serovar | Strain | Geographical area | Source |
|---|---|---|---|---|---|---|
INT 01 | L. interrogans | Canicola | Sumneri | Sumner | Malaysia | RB3 |
INT 02 | L. interrogans | Canicola | Portlandvere | MY 1039 | Jamaica | RB3 |
INT 03 | L. interrogans | Pomona | Pomona | Pomona | Australia | RB3 |
INT 04 | L. interrogans | Pomona | Proechimys | 1161 U | Panama | RB3 |
INT 05 | L. interrogans | Pomona | Kenniwicki | LT 1026 | USA | RB3 |
INT 06 | L. interrogans | Grippotyphosa | Grippotyphosa | Moskva V | Unknown | RB4 |
INT 07 | L. interrogans | Grippotyphosa | Muelleri | RM 2 | Malaysia | RB3 |
INT 08 | L. interrogans | Sejroe | Roumanica | LM 294 | Roumania | RB3 |
INT 09 | L. interrogans | Sejroe | Saxkoebing | Mus 24 | Denmark | RB3 |
INT 10 | L. interrogans | Sejroe | Hardjoprajitno | Hardjoprajitno | Indonesia | RB3 |
INT 11 | L. interrogans | Icterohaemorrhagiae | Lai | Lai | China | RB3 |
INT 12 | L. interrogans | Icterohaemorrhagiae | Copenhageni | M 20 | Denmark | RB3 |
INT 13 | L. interrogans | Grippotyphosa | Valbuzzi | Valbuzzi | Australia | RB3 |
INT 14 | L. interrogans | Pyrogenes | Manilae | LT 398 | Phillipins | RB3 |
INT 15 | L. interrogans | Australis | Australis | Ballico | Ballico | RK3 |
INT 16 | L. interrogans | Icterohaemorrhagiae | Icterohaemorrhagiae | RGA | Germany | RK3 |
INT 17 | L. interrogans | Grippotyphosa | Ratnapura | Field Isolate 1 | South Andaman | Isol 15 |
INT 18 | L. interrogans | Icterohaemorrhagiae | Copenhageni | Field Isolate 2 | South Andaman | Isol 15 |
INT 19 | L. interrogans | Grippotyphosa | Ratnapura | Field Isolate 3 | South Andaman | Isol 15 |
INT 20 | L. interrogans | Grippotyphosa | Ratnapura | Field Isolate 4 | South Andaman | Isol 15 |
INT 21 | L. interrogans | Grippotyphosa | Valbuzzi | Field Isolate 5 | South Andaman | Isol 15 |
INT 22 | L. interrogans | Icterohaemorrhagiae | Copenhageni | Field Isolate 6 | South Andaman | Isol 15 |
INT 23 | L. interrogans | Grippotyphosa | Valbuzzi | Field Isolate 7 | North Andaman | Isol 15 |
INT 24 | L. interrogans | Grippotyphosa | Valbuzzi | Field Isolate 8 | North Andaman | Isol 15 |
INT 25 | L. interrogans | Grippotyphosa | Ratnapura | Field Isolate 9 | South Andaman | Isol 15 |
INT 26 | L. interrogans | Grippotyphosa | Ratnapura | Field Isolate 10 | South Andaman | Isol 15 |
INT 27 | L. interrogans | Grippotyphosa | Ratnapura | Field Isolate 11 | South Andaman | Isol 15 |
INT 28 | L. interrogans | Grippotyphosa | Unknown | Field Isolate 12 | South Andaman | Isol 15 |
INT 29 | L. interrogans | Grippotyphosa | Unknown | Field Isolate 13 | South Andaman | Isol 15 |
INT 30 | L. interrogans | Sejroe | Sejroe | Field Isolate 14 | South Andaman | Isol 15 |
INT 31 | L. interrogans | Pomona | Unknown | Field Isolate 15 | South Andaman | Isol 15 |
INT 32 | L. interrogans | Grippotyphosa | Ratnapura | Field Isolate 16 | South Andaman | Isol 15 |
INT 33 | L. interrogans | Australis | Ramisi | Field Isolate 17 | South Andaman | Isol 15 |
INT 34 | L. interrogans | Grippotyphosa | Unknown | Field Isolate 18 | South Andaman | Isol 15 |
INT 35 | L. interrogans | Grippotyphosa | Valbuzzi | Field Isolate 19 | South Andaman | Isol 15 |
INT 36 | L. interrogans | Grippotyphosa | Valbuzzi | Field Isolate 20 | South Andaman | Isol 15 |
INT 37 | L. interrogans | Hebdomadis | Goiano | Bovino 131 | Brazil | RB3 |
INT 38 | L. interrogans | Canicola* | Canicola* | M12/90 | Brazil | Isol |
INT 39 | L. interrogans | Icterohaemorrhagiae* | Copenhageni* | M9/99 | Brazil | Isol |
INT 40 | L. interrogans | Australis* | Rushan* | L01 | Brazil | Isol |
INT 41 | L. interrogans | Canicola* | Canicola* | L02 | Brazil | Isol |
INT 42 | L. interrogans | Canicola* | Canicola* | L03 | Brazil | Isol |
INT 43 | L. interrogans | Canicola* | Canicola* | L09 | Brazil | Isol |
INT 44 | L. interrogans | Icterohaemorrhagiae* | Copenhageni* | L10 | Brazil | Isol |
INT 45 | L. interrogans | Canicola* | Canicola* | L14 | Brazil | Isol |
INT 46 | L. interrogans | Lyme* | Lyme* | K30B | UK | Isol |
INT 47 | L. interrogans | Australis* | Australis* | K9H | UK | Isol |
INT 48 | L. interrogans | Icterohaemorrhagiae* | Copenhageni* | Isolate 9 | Costa Rica | Isol |
INT 49 | L. interrogans | Unknown* | Unknown* | Isolate 10 | Costa Rica | Isol |
INT 50 | L. interrogans | Australis* | Lora* | 1992 | Tanzania | Isol |
INT 51 | L. interrogans | Australis* | Lora* | 2324 | Tanzania | Isol |
INT 52 | L. interrogans | Australis* | Lora* | 2364 | Tanzania | Isol |
INT 53 | L. interrogans | Australis* | Lora* | 2366 | Tanzania | Isol |
INT 54 | L. interrogans | Ballum* | Kenya* | 4885 | Tanzania | Isol |
INT 55 | L. interrogans | Ballum* | Kenya* | 4883 | Tanzania | Isol |
KIR 01 | L. kirschneri | Canicola | Kuwait | 136/2/2 | Kuwait | RB3 |
KIR 02 | L. kirschneri | Canicola | Schueffneri | Vleermuis 90 C | Indonesia | RB3 |
KIR 03 | L. kirschneri | Pomona | Mozdok | 5621 | Soviet Union (Russia) | RB3 |
KIR 04 | L. kirschneri | Grippotyphosa | Vanderhoedeni | Kipod 179 | Israel | RB3 |
KIR 05 | L. kirschneri | Pomona | Tsaratsovo | B 81/7 | Bulgaria | RB3 |
KIR 06 | L. kirschneri | Grippotyphosa | Grippotyphosa | Moskva V | Russia | RK3 |
KIR 07 | L. kirschneri | Grippotyphosa | Ratnapura | Wumalasena | Sri Lanka | RK3 |
KIR 08 | L. kirschneri | Icterohaemorrhagiae* | Sokoine* | 745 | Tanzania | Isol |
KIR 09 | L. kirschneri | Icterohaemorrhagiae* | Sokoine* | 771 | Tanzania | Isol |
KIR 10 | L. kirschneri | Icterohaemorrhagiae* | Mwogolo* | 826 | Tanzania | Isol |
KIR 11 | L. kirschneri | Icterohaemorrhagiae* | Mwogolo* | 845 | Tanzania | Isol |
KIR 12 | L. kirschneri | Canicola* | Qunjian* | 2980 | Tanzania | Isol |
KIR 13 | L. kirschneri | Icterohaemorrhagiae* | Sokoine* | 4602 | Tanzania | Isol |
KIR 14 | L. kirschneri | Sejroe* | Ricardi/Saxkoebing* | 1499 | UK | Isol |
KIR 15 | L. kirschneri | Sejroe* | Ricardi/Saxkoebing* | 1501 | UK | Isol |
KIR 16 | L. kirschneri | Ballum* | Kenya | Njenga | Kenya | RK3 |
NOG 01 | L. noguchii | Pyrogenes | Myocastoris | LSU 1551 | USA | RB3 |
NOG 02 | L. noguchii | Louisiana | Louisiana | LSU 1945 | USA | RK3 |
NOG 03 | L. noguchii | Panama | Panama | CZ214k | Panama | RK3 |
NOG 04 | L. noguchii | Pyrogenes* | Guaratuba * | Isolate 4 | Costa Rica | Isol |
SAN 01 | L. santarosai | Mini | Georgia | LT 117 | USA | RB3 |
SAN 02 | L. santarosai | Sejroe | Recreo | 380 | Nicaragua | RB3 |
SAN 03 | L. santarosai | Pyrogenes | Guaratuba | An 7705 | Brazil | RB3 |
SAN 04 | L. santarosai | Pyrogenes | Varela | 1019 | Nicaragua | RB3 |
SAN 05 | L. santarosai | Grippotyphosa | Canalzonae | CZ188 | Panama | RK3 |
SAN 06 | L. santarosai | Bataviae* | Brasiliensis* | An 776 | Brazil | Isol |
SAN 07 | L. santarosai | Sejroe* | Guaricura* | Bov.G | Brazil | Isol |
SAN 08 | L. santarosai | Sejroe* | Guaricura* | M4/98 | Brazil | Isol |
SAN 09 | L. santarosai | Grippotyphosa* | Bananal* | 2ACAP | Brazil | Isol |
SAN 10 | L. santarosai | Grippotyphosa* | Bananal* | 16CAP | Brazil | Isol |
SAN 11 | L. santarosai | Pyrogenes* | Alexi/Guaratuba/Princestown* | Isolate 1 | Costa Rica | Isol |
SAN 12 | L. santarosai | Sarmin* | Weaveri/Rio* | Isolate 2 | Costa Rica | Isol |
SAN 13 | L. santarosai | Tarassovi* | Rama* | Isolate 3 | Costa Rica | Isol |
SAN 14 | L. santarosai | Tarassovi* | Rama* | Isolate 5 | Costa Rica | Isol |
SAN 15 | L. santarosai | Bataviae* | Claytoni* | Isolate 6 | Costa Rica | Isol |
SAN 16 | L. santarosai | Shermani* | Shermani/Babudieri/Aguaruna* | Isolate 8 | Costa Rica | Isol |
SAN 17 | L. santarosai | unknown* | (putative new serovar)# | Isolate 7 | Costa Rica | Isol |
SAN 18 | L. santarosai | Icterohaemorrhagiae* | Copenhageni* | K13A | UK | Isol |
ALE 01 | L. alexanderi | Manhao | Manhao | L60 | China | RK3 |
BOR 01 | L. borgpetersenii | Sejroe | Istarica | Bratislava | Slovakia | RB3 |
BOR 02 | L. borgpetersenii | Sejroe | Sejroe | M 84 | Denmark | RB3 |
BOR 03 | L. borgpetersenii | Javanica | Dehong | De 10 | China | RB3 |
BOR 04 | L. borgpetersenii | Javanica | Javanica | Veltrat Batavia | Indonesia | RB3 |
BOR 05 | L. borgpetersenii | Javanica | Zhenkang | L 82 | China | RB3 |
BOR 06 | L. borgpetersenii | Javanica | Poi | Poi | Italy | RK3 |
BOR 07 | L. borgpetersenii | Mini | Mini | Sari | Italy | RK3 |
BOR 08 | L. borgpetersenii | Ballum* | Kenya* | 153 | Tanzania | Isol |
BOR 09 | L. borgpetersenii | Ballum * | Kenya* | 159 | Tanzania | Isol |
BOR 10 | L. borgpetersenii | Ballum * | Kenya* | 723 | Tanzania | Isol |
BOR 11 | L. borgpetersenii | Ballum * | Kenya* | 766 | Tanzania | Isol |
BOR 12 | L. borgpetersenii | Ballum * | Kenya* | 1605 | Tanzania | Isol |
BOR 13 | L. borgpetersenii | Ballum * | Kenya* | 1610 | Tanzania | Isol |
BOR 14 | L. borgpetersenii | Ballum * | Kenya* | 2062 | Tanzania | Isol |
BOR 15 | L. borgpetersenii | Ballum * | Kenya* | 2348 | Tanzania | Isol |
BOR 16 | L. borgpetersenii | Ballum * | Kenya* | 2447 | Tanzania | Isol |
BOR 17 | L. borgpetersenii | Ballum * | Kenya* | 4880 | Tanzania | Isol |
BOR 18 | L. borgpetersenii | Ballum * | Kenya* | 4787 | Tanzania | Isol |
BOR 19 | L. borgpetersenii | Hebdomadis* | Kremastos/Hebdomadis* | 873 | Ireland | Isol |
BOR 20 | L. borgpetersenii | Hebdomadis* | Kremastos/Hebdomadis* | 871 | Ireland | Isol |
BOR 21 | L. borgpetersenii | Sejroe* | Saxkoebing* | 1498 | Ireland | Isol |
BOR 22 | L. borgpetersenii | Sejroe* | Ricardi/Saxkoebing* | 1522 | UK | Isol |
BOR 23 | L. borgpetersenii | Sejroe* | Ricardi/Saxkoebing* | 1525 | UK | Isol |
BOR 24 | L. borgpetersenii | Pomona* | Kunming* | RIM 139 | Portugal | Isol |
BOR 25 | L. borgpetersenii | Pomona* | Kunming* | RIM 201 | Portugal | Isol |
BOR 26 | L. borgpetersenii | Sejroe* | Ricardi/Saxkoebing* | RIM 156 | Portugal | Isol |