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Table 2 ITS2-based identification of a collection of 31 fungi “difficult-to-identify” clinical isolates

From: Molecular identification of clinical “difficult-to-identify” microbes from sequencing 16S ribosomal DNA and internal transcribed spacer 2

Genus/straind

No. of isolates

Source of isolates

GenBank accession no.

BLAST

    

E-value

% ID

Aspergillus flavus

1

Secretion

KF425318

7e-131

100

Aspergillus fumigatus

2

Sputum

JF487933

9e-130

100

Aspergillus niger

1

Sputum

KF425317

2e-132

100

Aspergillus terreus

2

Sputum, secretion

KF425307

1e-133

99

Cryptococcus neoformans

1

Blood

KF425316

3e-140

100

Exophiala jeanselmei

1

Sputum

KF425314

5e-138

100

Fusarium sp.

3

Blood, secretion

JF487937

2e-136

--c

Penicillium marneffei

9

Blood, sputum, secretion

JF422020

5e-148

100

Phomopsis sp.a

1

Secretion

KF425311

1e-122

--c

Rhizopus oryzae

1

Secretion

KF425308

4e-139

100

Rhodotorula mucilaginosa

1

Blood

KF425309

1e-158

100

Trichomonascus ciferrii a

1

Secretion

KF425312

3e-135

100

Trichosporon asahii

5

Blood, urine, secretion

KF425306

7e-126

100

Trichosporon asteroides

1

Blood

KF425313

6e-132

100

Trichosporon jirovecii

1

Secretion

KF425310

9e-130

100

  1. aThe clinical isolates first reported in China.
  2. cMore than two species in the same genus with the % ID ≥ 98%.
  3. dAll these isolates are not available to be identified by Phoneix or Microscan.