From: Comparison of methods for the identification of microorganisms isolated from blood cultures
Microorganism | Gene | Annealing temperature (°C) | Amplicon size (bp) | Reference |
---|---|---|---|---|
Acinetobacter baumannii | blaOXA_51-like | 52 | 353 | [44] |
Acinetobacter lwoffii | blaOXA_154-like | 52 | 223 | [45] |
Enterobacter cloacae | Hsp60 (housekeeping) | 52 | 343 | [46] |
Enterococcus faecalis | 16S chromosomal region | 60 | 143 | [47] |
Enterococcus faecium | sodA (superoxide dismutase) | 45 | 216 | [21] |
Escherichia coli | gadA (alpha-glutamate decarboxylase) | 65 | 373 | [48] |
Klebsiella pneumoniae | rpoB (β subunit of RNA polymerase) | 52 | 364 | [49] |
Morganella morganii | 16S chromosomal region | 62 | 809 | [50] |
Proteus mirabilis | rsbA (quorum sensing) | 55 | 236 | [51] |
Pseudomonas aeruginosa | Genome fragment | 55 | 724 | [52] |
Serratia marcescens | 16S chromosomal region | 52 | 1058 | [53] |
Staphylococcus aureus | 16S chromosomal region | 52 | 442 | [54] |
Stenotrophomonas maltophilia | atpD (housekeeping) | 52 | 854 | [55] |
Bacillus spp. | rpoB (β subunit of RNA polymerase) | 72 | 400 | [14] |
Enterobacter aerogenes | 16SrDNA | 55 | 280 | [15] |